Resources

  • PyGenomics

    — a Python package that implements reading, writing, and transforming genomic intervals between various bioinformatic data file formats. The package routines can be easily incorporated into Snakemake pipelines or other bioinformatic data processing workflows.

    Repository. Additional package. Examples.

  • Structural variant warehouse

    — a resource containing annotated patterns of sequence coverage signals, as well as statistical models of signal profiles associated with five main types of structural variation. The database contains approximately 23 million patterns extracted from the whole genome sequencing data provided by several large-scale genomics projects (e.g., HGDP). A robust and flexible graphical user interface enables smooth data visualization, management and download, which increases usability of the data and enables its uses in other applications.

    SWaveform: https://swaveform.compbio.ru/